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Minor Significant Markdown parsing issue: like nearly every other Markdown editor, Ulysses does not correctly interpret the "two trailing space" rule for manual line breaks.
Here is an example:
The original Markdown spec says you should be able to create a manual line break (i.e., without ending the current block or paragraph) by ending a line with two spaces.
In the example above, you can see the two trailing spaces but the block quotation syntax highlighting does not carry through to any of the lines after the first one.